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Validation and data integrity

What are the three stages of process validation?

FDA’s 2011 guidance divides process validation into three stages. Stage 1, process design, defines the commercial process from development and scale-up knowledge. Stage 2, process qualification, qualifies the facility, utilities and equipment and runs process performance qualification (PPQ) to show the process can reproducibly make commercial product; PPQ must be completed before commercial distribution. Stage 3, continued process verification, gives ongoing assurance during routine production that the process stays in a state of control.

Illustration of a seal comparing two equipment versions, each linked to its retained evidence.

1What process validation is.

FDA defines process validation as “the collection and evaluation of data, from the process design stage through commercial production, which establishes scientific evidence that a process is capable of consistently delivering quality product”. Its guidance, issued in January 2011 as Revision 1, is non-binding, but process validation itself is “a legally enforceable requirement” under section 501(a)(2)(B) of the Federal Food, Drug, and Cosmetic Act.¹

The regulations behind it are in 21 CFR Part 211. Section 211.100(a) requires written procedures for production and process control “designed to assure that the drug products have the identity, strength, quality, and purity they purport or are represented to possess”,² and 211.110(a) requires control procedures “to monitor the output and to validate the performance of those manufacturing processes that may be responsible for causing variability”.³ FDA notes that process validation procedures must be established and followed before a batch can be distributed.¹

2The three stages.

FDA describes process validation as activities over the life cycle of the product and process, in three stages.¹

StageNameWhat it establishes
1Process designThe commercial manufacturing process is defined from knowledge gained through development and scale-up.
2Process qualificationThe process design is evaluated to determine whether the process is capable of reproducible commercial manufacturing.
3Continued process verificationOngoing assurance is gained during routine production that the process remains in a state of control.

The stages are not watertight: FDA says “some activities might occur in multiple stages”.¹

3Stage 1: process design.

Process design builds and captures process knowledge and sets a strategy for process control. Design of experiment studies, laboratory and pilot work, and models help establish how process inputs relate to outputs, but “FDA does not generally expect manufacturers to develop and test the process until it fails.” Controls address variability, and “FDA expects controls to include both examination of material quality and equipment monitoring.” The planned commercial production and control records, with their operational limits and control strategy, carry forward to Stage 2 for confirmation.¹

4Stage 2: process qualification.

Stage 2 has two elements: design of the facility and qualification of the equipment and utilities, and process performance qualification (PPQ). Qualification work is planned, documented and reported, and the quality control unit must review and approve the qualification plan and report under 211.22.¹ EU GMP Annex 15 sets out equipment qualification as design, installation, operational and performance qualification;⁴ see IQ, OQ and PQ.

PPQ combines the qualified facility, utilities and equipment, and trained personnel, with the commercial process, control procedures and components “to produce commercial batches”. The protocol sets the tests, acceptance criteria and sampling plan, with enough samples “to provide sufficient statistical confidence of quality both within a batch and between batches”, and sampling more extensive than in routine production. Data should not be excluded “without a documented, science-based justification”.¹

“A manufacturer must successfully complete PPQ before commencing commercial distribution of the drug product”, and that decision should be supported by data from commercial-scale batches. The guidance sets no number of PPQ batches: the approach “should be based on sound science and the manufacturer’s overall level of product and process understanding and demonstrable control”; see how many PPQ batches. Releasing a PPQ batch before the protocol is complete, concurrent release, is possible in special situations, but FDA “expects that concurrent release will be used rarely”.¹

5Stage 3: continued process verification.

The goal is “continual assurance that the process remains in a state of control (the validated state) during commercial manufacture”. FDA says an ongoing programme to collect and analyse product and process data must be established under 211.180(e), with the data statistically trended and reviewed by trained personnel. It recommends that a statistician or someone trained in statistical process control design the data collection plan, and that monitoring and sampling continue at the level set during PPQ until there are enough data for significant variability estimates.¹ The regulation itself requires records to be kept so their data can be evaluated “at least annually”.⁵

For legacy products already on the market, FDA expects implementation “would likely begin with the activities described in Stage 3”.¹ Continued process verification covers monitoring plans and signals in more detail.

6How EU GMP Annex 15 compares.

EU GMP Annex 15, dated 30 March 2015 and in operation since 1 October 2015, sets the EU requirements in section 5. It does not use FDA’s three stages, but the content overlaps.¹⁴

TopicFDA guidance, 2011EU GMP Annex 15, 2015
StructureThree stagesA traditional, continuous or hybrid approach, with ongoing process verification for all three
Monitoring in routine productionContinued process verificationOngoing process verification, “also known as continued process verification”
Number of batchesBased on science and process understandingJustified by each manufacturer; a minimum of three consecutive batches is “generally considered acceptable” (5.20)
Batch sizeCommercial-scale data before distributionNormally the intended commercial batch size (5.8)
Release before validation is completeConcurrent release, used rarelyConcurrent validation only in exceptional circumstances with a strong benefit-risk ratio for the patient (5.16)
Retrospective validationNot addressed; for legacy products, implementation would likely begin with Stage 3“no longer an acceptable approach” (5.3)
Clinical trial materialOutside the guidance’s commercial processInvestigational products refer to Annex 13 (5.15)

7How it runs in Seal.

In Seal, the process validation blueprint keeps the validation basis, PPQ protocol, execution records, reviewed results and exceptions as connected records, so each requirement is reviewed against the full evidence set, including missed steps and unsuccessful outcomes. In its example, exception EX-014, a missed planned sampling time, still has no completed impact assessment, and review starts from open exceptions like that one rather than from a batch count. Reviewed controls and residual risks carry into continued process verification.

Before PPQ, process characterisation runs each study condition against a versioned protocol, so proposed operating ranges trace to the runs that support them. After it, continued process verification keeps trends connected to the batches, process versions, methods and materials behind them, with pending and non-comparable results kept visible outside the analysis.

References

  1. 1Process Validation: General Principles and Practices, Guidance for Industry, Revision 1, FDA, January 2011. https://www.fda.gov/media/71021/download (read 6 November 2026)
  2. 221 CFR 211.100, Written procedures; deviations, eCFR. https://www.ecfr.gov/current/title-21/section-211.100 (read 6 November 2026)
  3. 321 CFR 211.110, Sampling and testing of in-process materials and drug products, eCFR. https://www.ecfr.gov/current/title-21/section-211.110 (read 6 November 2026)
  4. 4EudraLex Volume 4, Annex 15: Qualification and Validation, European Commission, 30 March 2015, in operation since 1 October 2015. https://health.ec.europa.eu/system/files/2016-11/2015-10_annex15_0.pdf (read 6 November 2026)
  5. 521 CFR 211.180, General requirements (records and reports), eCFR. https://www.ecfr.gov/current/title-21/section-211.180 (read 6 November 2026)

AQuestions and answers

Is process validation a legal requirement in the US?

Yes. FDA treats it as legally enforceable under section 501(a)(2)(B) of the Federal Food, Drug, and Cosmetic Act, and 21 CFR 211.100 and 211.110 require procedures designed to assure quality and to validate the performance of processes that can cause variability. The 2011 guidance’s specific recommendations are not binding.

How many PPQ batches are needed?

FDA does not set a number: the PPQ approach should rest on sound science and the level of process understanding, with enough data for statistical confidence within and between batches. EU GMP Annex 15 asks each manufacturer to justify the number and says a minimum of three consecutive batches is generally considered acceptable.

What is the difference between continued, ongoing and continuous process verification?

Continued process verification is FDA’s Stage 3, and Annex 15 calls the same activity ongoing process verification. Continuous process verification is different: an alternative to traditional process validation, for products developed by a quality by design approach, in which process performance is continuously monitored and evaluated.

Can PPQ batches be sold?

Yes, if they are acceptable and PPQ has been successfully completed. FDA allows release of a PPQ batch before the protocol is complete only in special situations. In the EU, any plan to release validation batches must be defined in advance, and the batches must comply fully with GMP, the acceptance criteria and the marketing authorisation.

Where do IQ, OQ and PQ fit in the three stages?

Equipment and utility qualification is the first element of Stage 2, before process performance qualification. Annex 15 says equipment PQ normally follows IQ and OQ, but may in some cases be done together with OQ or with process validation. Equipment PQ and process performance qualification are different activities.

Does the FDA guidance apply to clinical trial material?

No. The guidance’s commercial manufacturing process excludes clinical trial and treatment IND material, which should follow the CGMPs appropriate to the phase of study. In the EU, Annex 15 points to Annex 13 for investigational medicinal products.

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